Software

• Github
• Gitlab

Highlights

compate_genomes

Violinplotter

An R package for generating violin plots with optional mean comparison with Tukey’s honest significant difference (HSD) and linear regression.

This package aims to b a simple and quick visualization tool for comparing means and assessing trends of categorical factors.

GWAlpha.jl

A Julia package for building genomic prediction models and performing genome-wide association on quantitative traits by inferring additive allelic effects using pool sequencing data (Pool-seq; i.e. allele frequencies).

instaGraminoid

A suite of Bash, python, and R scripts for extracting plant health-related metrics from plant photographs.

mucilage_seed_areas_openCV

Measure Arabidopsis thaliana seed mucilage area.